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GrainGenes Marker Report: POPA2_0265

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Locus
POPA2_0265
Type
SNP
Synonym
Other name11_20265
BOPA1_11_20265
BOPA1_1910-1343
Synonym11_20265
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H62.15
Hordeum-OPA123-2008-5H62.15
Hordeum-OPAConsensus-2011-5H53.84
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15232
i_11_20265
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0265
Marker name in barley OPA1 = 11_20265
Original SNP name = 1910-1343
Most representative HarvEST:Barley Assembly #32 Unigene = 1910
Most representative HarvEST:Barley Assembly #35 Unigene = 15232
HarvEST Unigene 35 Probe Set = Contig2825_at; HS16E24u_s_at
Unigene 35 Rice Locus = LOC_Os09g20390
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-146
Marker name in barley Pilot OPA2 = 2_0265
HarvEST Unigene 35 Probe Set = Contig2825_at, HS16E24u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-146
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_15232
Locus
POPA2_0265
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare