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GrainGenes Marker Report: POPA2_0267

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Locus	POPA2_0267
Type	SNP
Synonym	Other name 11_20267 BOPA1_11_20267 BOPA1_1923-265 Synonym 11_20267
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 97.9 Hordeum-OPA-2009-1H 101.45 Hordeum-OPA123-2008-1H 101.45 Hordeum-OPAConsensus-2011-1H 105.77
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_955 i_11_20267
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0267 Marker name in barley OPA1 = 11_20267 Original SNP name = 1923-265 Most representative HarvEST:Barley Assembly #32 Unigene = 1923 Most representative HarvEST:Barley Assembly #35 Unigene = 955 HarvEST Unigene 35 Probe Set = Contig2841_at Unigene 35 Rice Locus = LOC_Os05g47446 Description for best rice BLAST hit to Unigene 35 member = programmed cell death protein 5, putative, expressed; E value = 2E-58 Marker name in barley Pilot OPA2 = 2_0267 Description for best rice BLAST hit to Unigene 35 member = protein programmed cell death protein 5, putative, expressed; E value = 2E-58 BLAST hit in the rice genome = programmed cell death protein 5, putative, expressed
Probe for Locus	HAR35_955
Locus	POPA2_0267
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare