GrainGenes Marker Report: POPA2_0273
Locus
POPA2_0273
Type
SNP
Synonym
Synonym 11_20273
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H 70.71 Hordeum-OPA123-2008-3H 70.71 Hordeum-OPAConsensus-2011-3H 83.58
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_962
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0273 Marker name in barley OPA1 = 11_20273 Original SNP name = 1961-287 Most representative HarvEST:Barley Assembly #32 Unigene = 1961 Most representative HarvEST:Barley Assembly #35 Unigene = 962 HarvEST Unigene 35 Probe Set = HVSMEi0006K11r2_s_at Unigene 35 Rice Locus = LOC_Os01g54030 Description for best rice BLAST hit to Unigene 35 member = NADP-dependent malic enzyme, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0273 Description for best rice BLAST hit to Unigene 35 member = protein NADP-dependent malic enzyme, putative, expressed; E value = 0 BLAST hit in the rice genome = NADP-dependent malic enzyme, putative, expressed
Probe for Locus
HAR35_962
Locus
POPA2_0273 POPA1_0200
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0273
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