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GrainGenes Marker Report: POPA2_0276

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Locus
POPA2_0276
Type
SNP
Synonym
Other name11_20276
BOPA1_11_20276
BOPA1_1977-1385
Synonym11_20276
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, SFNB QTL 2017 3H58.64
Hordeum-OPA-2009-3H58.64
Hordeum-OPA123-2008-3H58.64
Hordeum-OPAConsensus-2011-3H71.26
[ Show Nearby Loci ]
QTL with Locus Marker
QSfnb-3H-58.64
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, SFNB QTL 2017
Species
Hordeum vulgare
Probe
HAR35_15284
i_11_20276
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0276
Marker name in barley OPA1 = 11_20276
Original SNP name = 1977-1385
Most representative HarvEST:Barley Assembly #32 Unigene = 1977
Most representative HarvEST:Barley Assembly #35 Unigene = 15284
HarvEST Unigene 35 Probe Set = Contig2910_at
Unigene 35 Rice Locus = LOC_Os01g48190
Description for best rice BLAST hit to Unigene 35 member = fiber protein Fb2, putative, expressed; E value = 1E-110
Marker name in barley Pilot OPA2 = 2_0276
Description for best rice BLAST hit to Unigene 35 member = protein fiber protein Fb2, putative, expressed; E value = 1E-110
BLAST hit in the rice genome = fiber protein Fb2, putative, expressed


Probe for Locus
HAR35_15284
Locus
POPA2_0276
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare