GrainGenes Marker Report: POPA2_0279
Locus
POPA2_0279
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 51.57 Hordeum-OPA-2009-5H 70.48 Hordeum-OPA123-2008-5H 70.48 Hordeum-OPAConsensus-2011-5H 60.21
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_959
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0279 Most representative HarvEST:Barley Assembly #32 Unigene = 1983 Most representative HarvEST:Barley Assembly #35 Unigene = 959 HarvEST Unigene 35 Probe Set = Contig2924_s_at Unigene 35 Rice Locus = LOC_Os09g26880 Description for best rice BLAST hit to Unigene 35 member = aldehyde dehydrogenase family 7 member A1, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0279 Original SNP name = 1983-356 Original SNP name = SCRI_bbc11987_01_482 Description for best rice BLAST hit to Unigene 35 member = protein aldehyde dehydrogenase family 7 member A1, putative, expressed; E value = 0 BLAST hit in the rice genome = aldehyde dehydrogenase family 7 member A1, putative, expressed
Probe for Locus
HAR35_959
Locus
POPA1_0203 POPA2_0278 POPA2_0279
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0279
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