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GrainGenes Marker Report: POPA2_0284

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Locus	POPA2_0284
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 104.53 Hordeum-OPA123-2008-3H 104.53
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_15187
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0284 Most representative HarvEST:Barley Assembly #32 Unigene = 2001 Most representative HarvEST:Barley Assembly #35 Unigene = 15187 HarvEST Unigene 35 Probe Set = Contig2949_s_at Unigene 35 Rice Locus = LOC_Os04g16680 Description for best rice BLAST hit to Unigene 35 member = sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0284 Original SNP name = 2001-1327 Original SNP name = U32_12072_133 Description for best rice BLAST hit to Unigene 35 member = protein sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_15187
Locus	POPA2_0284
Synonym	Synonym PSR138
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare