Query (optional)   in Class  

GrainGenes Marker Report: POPA2_0298

[Submit comment/correction]

Locus
POPA2_0298
Type
SNP
Synonym
Other name11_20298
BOPA1_11_20298
BOPA1_2091-639
Synonym11_20298
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H122.4
Hordeum-OPA-2009-5H132.63
Hordeum-OPA123-2008-5H132.63
Hordeum-OPAConsensus-2011-5H125.09
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1154
i_11_20298
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0298
Marker name in barley OPA1 = 11_20298
Original SNP name = 2091-639
Most representative HarvEST:Barley Assembly #32 Unigene = 2091
Most representative HarvEST:Barley Assembly #35 Unigene = 1154
HarvEST Unigene 35 Probe Set = Contig3400_at
Unigene 35 Rice Locus = LOC_Os03g53190
Description for best rice BLAST hit to Unigene 35 member = histone H2A variant 3, putative, expressed; E value = 3E-70
Marker name in barley Pilot OPA2 = 2_0298
Description for best rice BLAST hit to Unigene 35 member = protein histone H2A variant 3, putative, expressed; E value = 3E-70
BLAST hit in the rice genome = histone H2A variant 3, putative, expressed


Probe for Locus
HAR35_1154
Locus
POPA2_0298
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare