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GrainGenes Marker Report: POPA2_0307

Locus	POPA2_0307
Type	SNP
Synonym	Synonym 11_20307
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 9.84 Hordeum-OPA123-2008-7H 9.84 Hordeum-OPAConsensus-2011-7H 6.79
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_969
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0307 Marker name in barley OPA1 = 11_20307 Original SNP name = 2148-498 Most representative HarvEST:Barley Assembly #32 Unigene = 2148 Most representative HarvEST:Barley Assembly #35 Unigene = 969 HarvEST Unigene 35 Probe Set = Contig3131_at; Contig3134_s_at Unigene 35 Rice Locus = LOC_Os06g02420 Description for best rice BLAST hit to Unigene 35 member = ATOZI1, putative, expressed; E value = 4E-31 Marker name in barley Pilot OPA2 = 2_0307 HarvEST Unigene 35 Probe Set = Contig3131_at, Contig3134_s_at Description for best rice BLAST hit to Unigene 35 member = protein ATOZI1, putative, expressed; E value = 4E-31 BLAST hit in the rice genome = ATOZI1, putative, expressed
Probe for Locus	HAR35_969
Locus	POPA2_0307
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare