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GrainGenes Marker Report: POPA2_0325

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Locus	POPA2_0325
Type	SNP
Synonym	Other name 11_20325 BOPA1_11_20325 BOPA1_2231-557 Synonym 11_20325 bcd1154
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 59.89 Hordeum-OPA123-2008-3H 59.89 Hordeum-OPAConsensus-2011-3H 71.26 Hordeum-OWB-OPA2008-3H 66.212
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1039 i_11_20325
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0325 Marker name in barley OPA1 = 11_20325 Original SNP name = 2231-557 Most representative HarvEST:Barley Assembly #32 Unigene = 2231 Most representative HarvEST:Barley Assembly #35 Unigene = 1039 HarvEST Unigene 35 Probe Set = Contig3293_at; HY08D02u_s_at; rbags18j12_s_at Unigene 35 Rice Locus = LOC_Os01g48420 Description for best rice BLAST hit to Unigene 35 member = peroxiredoxin-5, mitochondrial precursor, putative, expressed; E value = 1E-78 Marker name in barley Pilot OPA2 = 2_0325 HarvEST Unigene 35 Probe Set = Contig3293_at, HY08D02u_s_at, rbags18j12_s_at Description for best rice BLAST hit to Unigene 35 member = protein peroxiredoxin-5, mitochondrial precursor, putative, expressed; E value = 1E-78 BLAST hit in the rice genome = peroxiredoxin-5, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_1039
Locus	POPA2_0325
Synonym	Synonym BCD1154
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare