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GrainGenes Marker Report: POPA2_0328

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Locus	POPA2_0328
Type	SNP
Synonym	Other name 11_20328 BOPA1_11_20328 BOPA1_2254-156 Synonym 11_20328
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 48.63 Hordeum-OPA123-2008-3H 48.63 Hordeum-OPAConsensus-2011-3H 59.83
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15453 i_11_20328
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0328 Marker name in barley OPA1 = 11_20328 Original SNP name = 2254-156 Most representative HarvEST:Barley Assembly #32 Unigene = 2254 Most representative HarvEST:Barley Assembly #35 Unigene = 15453 HarvEST Unigene 35 Probe Set = Contig3286_s_at Unigene 35 Rice Locus = LOC_Os01g08860 Description for best rice BLAST hit to Unigene 35 member = 17.5 kDa class II heat shock protein, putative, expressed; E value = 1E-66 Marker name in barley Pilot OPA2 = 2_0328 Original SNP name = U35_15712_1129 Description for best rice BLAST hit to Unigene 35 member = protein 17.5 kDa class II heat shock protein, putative, expressed; E value = 1E-66 BLAST hit in the rice genome = 17.5 kDa class II heat shock protein, putative, expressed
Probe for Locus	HAR35_15453
Locus	POPA2_0328
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare