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GrainGenes Marker Report: POPA2_0339

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Locus	POPA2_0339
Type	SNP
Synonym	Other name 11_20339 BOPA1_11_20339 BOPA1_2319-278 Synonym 11_20339
Chromosome	3H
Map	Hordeum-OPAConsensus-2011-3H 174.2
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_15193 i_11_20339
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0339 Marker name in barley OPA1 = 11_20339 Original SNP name = 2319-278 Most representative HarvEST:Barley Assembly #32 Unigene = 2319 Most representative HarvEST:Barley Assembly #35 Unigene = 15193 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os01g73250 Description for best rice BLAST hit to Unigene 35 member = bundle sheath cell specific protein 1, putative, expressed; E value = 2E-31 BLAST hit in the rice genome = bundle sheath cell specific protein 1, putative, expressed
Probe for Locus	HAR35_15193
Locus	POPA2_0339