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GrainGenes Marker Report: POPA2_0345

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Locus	POPA2_0345
Type	SNP
Synonym	Synonym 12_20345
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 173.17 Hordeum-OPA123-2008-3H 173.17 Hordeum-OPAConsensus-2011-3H 180.12
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_15483
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0345 Marker name in barley OPA1 = 12_20345 Original SNP name = 2347-405 Most representative HarvEST:Barley Assembly #32 Unigene = 2347 Most representative HarvEST:Barley Assembly #35 Unigene = 15483 HarvEST Unigene 35 Probe Set = Contig3403_s_at Unigene 35 Rice Locus = LOC_Os10g27174 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S28, putative, expressed; E value = 2E-29 Marker name in barley Pilot OPA2 = 2_0345 Marker name in barley OPA2 = 12_20345 Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S28, putative, expressed; E value = 2E-29 BLAST hit in the rice genome = 40S ribosomal protein S28, putative, expressed
Probe for Locus	HAR35_15483
Locus	POPA2_0345
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare