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GrainGenes Marker Report: POPA2_0350

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Locus	POPA2_0350
Type	SNP
Synonym	Other name 12_20350 BOPA2_12_20350 Synonym 12_20350
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 72.29 Hordeum-OPA123-2008-5H 72.29 Hordeum-OPAConsensus-2011-5H 61.88
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15417 i_12_20350
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0350 Marker name in barley OPA1 = 12_20350 Original SNP name = 2365-405 Most representative HarvEST:Barley Assembly #32 Unigene = 2365 Most representative HarvEST:Barley Assembly #35 Unigene = 15417 HarvEST Unigene 35 Probe Set = Contig3433_at; Contig3433_x_at Unigene 35 Rice Locus = LOC_Os07g08160 Description for best rice BLAST hit to Unigene 35 member = early light-induced protein, chloroplast precursor, putative, expressed; E value = 1E-47 Marker name in barley Pilot OPA2 = 2_0350 Marker name in barley OPA2 = 12_20350 HarvEST Unigene 35 Probe Set = Contig3433_at, Contig3433_x_at Description for best rice BLAST hit to Unigene 35 member = protein early light-induced protein, chloroplast precursor, putative, expressed; E value = 1E-47 BLAST hit in the rice genome = early light-induced protein, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_15417
Locus	POPA2_0350
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare