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GrainGenes Marker Report: POPA2_0357

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Locus
POPA2_0357
Type
SNP
Synonym
Other name11_20357
BOPA1_11_20357
BOPA1_239-776
Synonym11_20357
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H49.68
Hordeum-OPA123-2008-7H49.68
Hordeum-OPAConsensus-2011-7H48.06
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_536
i_11_20357
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0357
Marker name in barley OPA1 = 11_20357
Original SNP name = 239-776
Most representative HarvEST:Barley Assembly #32 Unigene = 239
Most representative HarvEST:Barley Assembly #35 Unigene = 536
HarvEST Unigene 35 Probe Set = Contig840_s_at; HVSMEf0019M19r2_s_at
Unigene 35 Rice Locus = LOC_Os06g08080
Description for best rice BLAST hit to Unigene 35 member = pyrophosphate-energized vacuolar membrane proton pump, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0357
HarvEST Unigene 35 Probe Set = Contig840_s_at, HVSMEf0019M19r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein pyrophosphate-energized vacuolar membrane proton pump, putative, expressed; E value = 0
BLAST hit in the rice genome = pyrophosphate-energized vacuolar membrane proton pump, putative, expressed


Probe for Locus
HAR35_536
Locus
POPA2_0357
POPA1_0291
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare