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GrainGenes Marker Report: POPA2_0358

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Locus	POPA2_0358
Type	SNP
Synonym	Other name 11_20358 BOPA1_11_20358 BOPA1_2400-956 Synonym 11_20358
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 88.22 Hordeum-OPA123-2008-4H 88.22 Hordeum-OPAConsensus-2011-4H 96.42
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15462 i_11_20358
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0358 Marker name in barley OPA1 = 11_20358 Original SNP name = 2400-956 Most representative HarvEST:Barley Assembly #32 Unigene = 2400 Most representative HarvEST:Barley Assembly #35 Unigene = 15462 HarvEST Unigene 35 Probe Set = Contig3487_at; HS05E04u_s_at Unigene 35 Rice Locus = LOC_Os03g08280 Description for best rice BLAST hit to Unigene 35 member = proteasome subunit alpha type 6, putative, expressed; E value = 1E-131 Marker name in barley Pilot OPA2 = 2_0358 HarvEST Unigene 35 Probe Set = Contig3487_at, HS05E04u_s_at Description for best rice BLAST hit to Unigene 35 member = protein proteasome subunit alpha type 6, putative, expressed; E value = 1E-131 BLAST hit in the rice genome = proteasome subunit alpha type 6, putative, expressed
Probe for Locus	HAR35_15462
Locus	POPA2_0358
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare