Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0359

[Submit comment/correction]

Locus	POPA2_0359
Type	SNP
Synonym	Other name 12_20359 BOPA2_12_20359 Synonym 12_20359
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_15572 i_12_20359
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0359 Marker name in barley OPA1 = 12_20359 Original SNP name = 2404-1108 Most representative HarvEST:Barley Assembly #32 Unigene = 2404 Most representative HarvEST:Barley Assembly #35 Unigene = 15572 HarvEST Unigene 35 Probe Set = Contig3508_at; Contig3508_s_at; Contig3510_at Unigene 35 Rice Locus = LOC_Os09g30478 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-138 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_15572
Locus	POPA2_0359