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GrainGenes Marker Report: POPA2_0384

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Locus	POPA2_0384
Type	SNP
Synonym	Other name 11_20384 BOPA1_11_20384 BOPA1_2574-410 Synonym 11_20384
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 91.78 Hordeum-OPA123-2008-4H 91.78 Hordeum-OPAConsensus-2011-4H 99.36
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14456 i_11_20384
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0384 Marker name in barley OPA1 = 11_20384 Original SNP name = 2574-410 Most representative HarvEST:Barley Assembly #32 Unigene = 2574 Most representative HarvEST:Barley Assembly #35 Unigene = 14456 HarvEST Unigene 35 Probe Set = Contig3726_at; Contig3726_s_at; EBpi07_SQ001_B14_s_at Unigene 35 Rice Locus = LOC_Os10g31660 Description for best rice BLAST hit to Unigene 35 member = glycine-rich cell wall structural protein 2 precursor, putative, expressed; E value = 0.0000000003 Marker name in barley Pilot OPA2 = 2_0384 HarvEST Unigene 35 Probe Set = Contig3726_at, Contig3726_s_at, EBpi07_SQ001_B14_s_at Description for best rice BLAST hit to Unigene 35 member = protein glycine-rich cell wall structural protein 2 precursor, putative, expressed; E value = 0.0000000003 BLAST hit in the rice genome = glycine-rich cell wall structural protein 2 precursor, putative, expressed
Probe for Locus	HAR35_14456
Locus	POPA2_0384
Synonym	Synonym ABG618
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare