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GrainGenes Marker Report: POPA2_0388

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Locus	POPA2_0388
Type	SNP
Synonym	Other name 11_20388 BOPA1_11_20388 BOPA1_2611-1846 Synonym 11_20388
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 137.9 Hordeum-OPA-2009-5H 150.34 Hordeum-OPA123-2008-5H 150.34 Hordeum-OPAConsensus-2011-5H 146.55 Hordeum-OWB-OPA2008-5H 179.39
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1357 i_11_20388
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0388 Marker name in barley OPA1 = 11_20388 Original SNP name = 2611-1846 Most representative HarvEST:Barley Assembly #32 Unigene = 2611 Most representative HarvEST:Barley Assembly #35 Unigene = 1357 HarvEST Unigene 35 Probe Set = Contig3786_at; HVSMEi0003A22r2_s_at Unigene 35 Rice Locus = LOC_Os07g07490 Description for best rice BLAST hit to Unigene 35 member = YT521-B-like family protein, expressed; E value = 1E-179 Marker name in barley Pilot OPA2 = 2_0388 HarvEST Unigene 35 Probe Set = Contig3786_at, HVSMEi0003A22r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein YT521-B-like family protein, expressed; E value = 1E-179 BLAST hit in the rice genome = YT521-B-like family protein, expressed
Probe for Locus	HAR35_1357
Locus	POPA2_0388 POPA1_0333
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare