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GrainGenes Marker Report: POPA2_0408

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Locus	POPA2_0408
Type	SNP
Chromosome	3H
Chromosome Arm	3HO
Map	Barley-Core-2014_3H 58.31 Hordeum-OPA-2009-3H 55.57 Hordeum-OPA123-2008-3H 55.57 Hordeum-OPAConsensus-2011-3H 67.27 Hordeum-OWB-OPA2008-3H 62.951
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_15252
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0408 Most representative HarvEST:Barley Assembly #32 Unigene = 2751 Most representative HarvEST:Barley Assembly #35 Unigene = 15252 HarvEST Unigene 35 Probe Set = Contig3986_s_at Unigene 35 Rice Locus = LOC_Os05g44792 Description for best rice BLAST hit to Unigene 35 member = conserved hypothetical protein; E value = 1E-52 Marker name in barley Pilot OPA2 = 2_0408 Original SNP name = 2751-1412 Original SNP name = SCRI_olad_193 Description for best rice BLAST hit to Unigene 35 member = protein conserved hypothetical protein; E value = 1E-52 BLAST hit in the rice genome = conserved hypothetical protein
Probe for Locus	HAR35_15252
Locus	POPA1_0365 POPA2_0408
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare