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GrainGenes Marker Report: POPA2_0415

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Locus	POPA2_0415
Type	SNP
Synonym	Other name 11_20415 BOPA1_11_20415 BOPA1_2795-1707 Synonym 11_20415
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 15.2 Hordeum-OPA-2009-6H 13.21 Hordeum-OPA123-2008-6H 13.21 Hordeum-OPAConsensus-2011-6H 15.81
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15869 i_11_20415
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0415 Marker name in barley OPA1 = 11_20415 Original SNP name = 2795-1707 Most representative HarvEST:Barley Assembly #32 Unigene = 2795 Most representative HarvEST:Barley Assembly #35 Unigene = 15869 HarvEST Unigene 35 Probe Set = Contig4040_at; HVSMEk0017G20r2_s_at Unigene 35 Rice Locus = LOC_Os03g11200 Description for best rice BLAST hit to Unigene 35 member = pre-mRNA-processing protein prp39, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0415 HarvEST Unigene 35 Probe Set = Contig4040_at, HVSMEk0017G20r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein pre-mRNA-processing protein prp39, putative, expressed; E value = 0 BLAST hit in the rice genome = pre-mRNA-processing protein prp39, putative, expressed
Probe for Locus	HAR35_15869
Locus	POPA2_0415
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare