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GrainGenes Marker Report: POPA2_0423

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Locus	POPA2_0423
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Barley-Core-2014_3H 153.39 Hordeum-OPA-2009-3H 166.99 Hordeum-OPA123-2008-3H 166.99 Hordeum-OPAConsensus-2011-3H 173.43
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_1577
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0423 Most representative HarvEST:Barley Assembly #32 Unigene = 2833 Most representative HarvEST:Barley Assembly #35 Unigene = 1577 HarvEST Unigene 35 Probe Set = Contig4058_s_at Unigene 35 Rice Locus = LOC_Os04g44470 Description for best rice BLAST hit to Unigene 35 member = alpha-amylase/subtilisin inhibitor, putative, expressed; E value = 0.000000000002 Marker name in barley Pilot OPA2 = 2_0423 Original SNP name = 2833-78 Description for best rice BLAST hit to Unigene 35 member = protein alpha-amylase/subtilisin inhibitor, putative, expressed; E value = 0.000000000002 BLAST hit in the rice genome = alpha-amylase/subtilisin inhibitor, putative, expressed
Probe for Locus	HAR35_1577
Locus	POPA2_0423
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare