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GrainGenes Marker Report: POPA2_0432

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Locus	POPA2_0432
Type	SNP
Synonym	Other name 11_20432 BOPA1_11_20432 BOPA1_2877-867 Synonym 11_20432
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 59.1 Hordeum-OPA-2009-1H 64.3 Hordeum-OPA123-2008-1H 64.3 Hordeum-OPAConsensus-2011-1H 62.05
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1405 i_11_20432
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0432 Marker name in barley OPA1 = 11_20432 Original SNP name = 2877-867 Most representative HarvEST:Barley Assembly #32 Unigene = 2877 Most representative HarvEST:Barley Assembly #35 Unigene = 1405 HarvEST Unigene 35 Probe Set = Contig4121_at; Contig4122_s_at Unigene 35 Rice Locus = LOC_Os12g13320 Description for best rice BLAST hit to Unigene 35 member = argininosuccinate synthase, chloroplast precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0432 HarvEST Unigene 35 Probe Set = Contig4121_at, Contig4122_s_at Description for best rice BLAST hit to Unigene 35 member = protein argininosuccinate synthase, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = argininosuccinate synthase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_1405
Locus	POPA2_0432
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare