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GrainGenes Marker Report: POPA2_0443

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Locus	POPA2_0443
Type	SNP
Synonym	Synonym 11_20443
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 27.5 Hordeum-OPA123-2008-7H 27.5
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1513
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0443 Marker name in barley OPA1 = 11_20443 Original SNP name = 2916-576 Most representative HarvEST:Barley Assembly #32 Unigene = 2916 Most representative HarvEST:Barley Assembly #35 Unigene = 1513 HarvEST Unigene 35 Probe Set = Contig4189_at Unigene 35 Rice Locus = LOC_Os06g04800 Description for best rice BLAST hit to Unigene 35 member = proteasome subunit beta type 6 precursor, putative, expressed; E value = 1E-126 Marker name in barley Pilot OPA2 = 2_0443 Description for best rice BLAST hit to Unigene 35 member = protein proteasome subunit beta type 6 precursor, putative, expressed; E value = 1E-126 BLAST hit in the rice genome = proteasome subunit beta type 6 precursor, putative, expressed
Probe for Locus	HAR35_1513
Locus	POPA2_0443
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare