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GrainGenes Marker Report: POPA2_0445

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Locus	POPA2_0445
Type	SNP
Chromosome	4H
Chromosome Arm	4HS
Map	Barley-Core-2014_4H 46.25 Hordeum-OPA-2009-4H 39.76 Hordeum-OPA123-2008-4H 39.76 Hordeum-OPAConsensus-2011-4H 43.72
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_15740
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0445 Most representative HarvEST:Barley Assembly #32 Unigene = 2938 Most representative HarvEST:Barley Assembly #35 Unigene = 15740 HarvEST Unigene 35 Probe Set = Contig4199_at Unigene 35 Rice Locus = LOC_Os03g52340 Description for best rice BLAST hit to Unigene 35 member = endoplasmic oxidoreductin-1 precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0445 Original SNP name = 2938-108 Description for best rice BLAST hit to Unigene 35 member = protein endoplasmic oxidoreductin-1 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = endoplasmic oxidoreductin-1 precursor, putative, expressed
Probe for Locus	HAR35_15740
Locus	POPA2_0445
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare