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GrainGenes Marker Report: POPA2_0465

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Locus	POPA2_0465
Type	SNP
Synonym	Other name 11_20465 BOPA1_11_20465 BOPA1_3038-541 Synonym 11_20465
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPAConsensus-2011-6H 93.44
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_1573 i_11_20465
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0465 Marker name in barley OPA1 = 11_20465 Original SNP name = 3038-541 Most representative HarvEST:Barley Assembly #32 Unigene = 3038 Most representative HarvEST:Barley Assembly #35 Unigene = 1573 HarvEST Unigene 35 Probe Set = Contig4306_s_at; Contig4307_s_at Unigene 35 Rice Locus = LOC_Os03g26820 Description for best rice BLAST hit to Unigene 35 member = xylogen protein 1, putative, expressed; E value = 2E-38 BLAST hit in the rice genome = xylogen protein 1, putative, expressed
Probe for Locus	HAR35_1573
Locus	POPA2_0465