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GrainGenes Marker Report: POPA2_0478

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Locus	POPA2_0478
Type	SNP
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 59.71 Hordeum-OPA123-2008-1H 59.71
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_725
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0478 Most representative HarvEST:Barley Assembly #32 Unigene = 310 Most representative HarvEST:Barley Assembly #35 Unigene = 725 HarvEST Unigene 35 Probe Set = Contig466_at Unigene 35 Rice Locus = LOC_Os05g32220 Description for best rice BLAST hit to Unigene 35 member = 50S ribosomal protein L1, putative, expressed; E value = 1E-163 Marker name in barley Pilot OPA2 = 2_0478 Original SNP name = 310-1214 Description for best rice BLAST hit to Unigene 35 member = protein 50S ribosomal protein L1, putative, expressed; E value = 1E-163 BLAST hit in the rice genome = 50S ribosomal protein L1, putative, expressed
Probe for Locus	HAR35_725
Locus	POPA2_0478
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare