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GrainGenes Marker Report: POPA2_0489

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Locus	POPA2_0489
Type	SNP
Synonym	Other name 12_20489 BOPA2_12_20489 Synonym 12_20489
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 72.5 Hordeum-OPA-2009-2H 79.19 Hordeum-OPA123-2008-2H 79.19 Hordeum-OPAConsensus-2011-2H 90.48
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14236 i_12_20489
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0489 Marker name in barley OPA1 = 12_20489 Original SNP name = 316-1429 Most representative HarvEST:Barley Assembly #32 Unigene = 316 Most representative HarvEST:Barley Assembly #35 Unigene = 14236 HarvEST Unigene 35 Probe Set = Contig1800_at; Contig1800_s_at; Contig1800_x_at Unigene 35 Rice Locus = LOC_Os04g43800 Description for best rice BLAST hit to Unigene 35 member = phenylalanine ammonia-lyase, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0489 Marker name in barley OPA2 = 12_20489 HarvEST Unigene 35 Probe Set = Contig1800_at, Contig1800_s_at, Contig1800_x_at Description for best rice BLAST hit to Unigene 35 member = protein phenylalanine ammonia-lyase, putative, expressed; E value = 0 BLAST hit in the rice genome = phenylalanine ammonia-lyase, putative, expressed
Probe for Locus	HAR35_14236
Locus	POPA2_0489
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare