GrainGenes Marker Report: POPA2_0492
Locus
POPA2_0492
Type
SNP
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H 41.68 Hordeum-OPA-2009-3H 35.22 Hordeum-OPA123-2008-3H 35.22 Hordeum-OPAConsensus-2011-3H 35.95
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_16087
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0492 Most representative HarvEST:Barley Assembly #32 Unigene = 3177 Most representative HarvEST:Barley Assembly #35 Unigene = 16087 HarvEST Unigene 35 Probe Set = Contig4531_at Unigene 35 Rice Locus = LOC_Os01g05840 Description for best rice BLAST hit to Unigene 35 member = retinol dehydrogenase 11, putative, expressed; E value = 1E-155 Marker name in barley Pilot OPA2 = 2_0492 Original SNP name = 3177-1330 Description for best rice BLAST hit to Unigene 35 member = protein retinol dehydrogenase 11, putative, expressed; E value = 1E-155 BLAST hit in the rice genome = retinol dehydrogenase 11, putative, expressed
Probe for Locus
HAR35_16087
Locus
POPA1_0428 POPA2_0492
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0492
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