Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0494

[Submit comment/correction]

Locus	POPA2_0494
Type	SNP
Synonym	Other name 11_20494 BOPA1_11_20494 BOPA1_3179-497 Synonym 11_20494
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 139.65 Hordeum-OPA123-2008-2H 139.65 Hordeum-OPAConsensus-2011-2H 155.68
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1764 i_11_20494
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0494 Marker name in barley OPA1 = 11_20494 Original SNP name = 3179-497 Most representative HarvEST:Barley Assembly #32 Unigene = 3179 Most representative HarvEST:Barley Assembly #35 Unigene = 1764 HarvEST Unigene 35 Probe Set = Contig4512_at; Contig4512_s_at Unigene 35 Rice Locus = LOC_Os04g54430 Description for best rice BLAST hit to Unigene 35 member = nucleolin, putative, expressed; E value = 4E-63 Marker name in barley Pilot OPA2 = 2_0494 HarvEST Unigene 35 Probe Set = Contig4512_at, Contig4512_s_at Description for best rice BLAST hit to Unigene 35 member = protein nucleolin, putative, expressed; E value = 4E-63 BLAST hit in the rice genome = nucleolin, putative, expressed
Probe for Locus	HAR35_1764
Locus	POPA2_0494
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare