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GrainGenes Marker Report: POPA2_0503

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Locus	POPA2_0503
Type	SNP
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 123.33 Hordeum-OPA123-2008-5H 123.33
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_14365
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0503 Most representative HarvEST:Barley Assembly #32 Unigene = 3222 Most representative HarvEST:Barley Assembly #35 Unigene = 14365 HarvEST Unigene 35 Probe Set = Contig4599_s_at Unigene 35 Rice Locus = LOC_Os09g38560 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 3E-28 Marker name in barley Pilot OPA2 = 2_0503 Original SNP name = 3222-338 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 3E-28 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_14365
Locus	POPA1_0439 POPA2_0503
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare