Query (optional)   in Class  

GrainGenes Marker Report: POPA2_0504

[Submit comment/correction]

Locus
POPA2_0504
Type
SNP
Synonym
Other name11_20504
BOPA1_11_20504
BOPA1_3225-520
Synonym11_20504
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H157.76
Hordeum-OPA123-2008-7H157.76
Hordeum-OPAConsensus-2011-7H158.84
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1641
i_11_20504
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0504
Marker name in barley OPA1 = 11_20504
Original SNP name = 3225-520
Most representative HarvEST:Barley Assembly #32 Unigene = 3225
Most representative HarvEST:Barley Assembly #35 Unigene = 1641
HarvEST Unigene 35 Probe Set = Contig4540_at; EBem05_SQ004_D02_s_at
Unigene 35 Rice Locus = LOC_Os05g03150
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 6E-41
Marker name in barley Pilot OPA2 = 2_0504
HarvEST Unigene 35 Probe Set = Contig4540_at, EBem05_SQ004_D02_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 6E-41
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_1641
Locus
POPA2_0504
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare