Query (optional)   in Class  

GrainGenes Marker Report: POPA2_0505

[Submit comment/correction]

Locus
POPA2_0505
Type
SNP
Synonym
Other name12_20505
BOPA2_12_20505
Synonym12_20505
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H139
Hordeum-OPA-2009-3H155.09
Hordeum-OPA123-2008-3H155.09
Hordeum-OPAConsensus-2011-3H162.83
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16221
i_12_20505
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0505
Marker name in barley OPA1 = 12_20505
Original SNP name = 3226-874
Most representative HarvEST:Barley Assembly #32 Unigene = 3226
Most representative HarvEST:Barley Assembly #35 Unigene = 16221
HarvEST Unigene 35 Probe Set = Contig4567_at
Unigene 35 Rice Locus = LOC_Os11g32320
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-101
Marker name in barley Pilot OPA2 = 2_0505
Marker name in barley OPA2 = 12_20505
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-101
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_16221
Locus
POPA2_0505
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare