GrainGenes Marker Report: POPA2_0516
Locus
POPA2_0516
Type
SNP
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Core-2014_7H 138.14 Hordeum-OPA-2009-7H 132.24 Hordeum-OPA123-2008-7H 132.24 Hordeum-OPAConsensus-2011-7H 132.79
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_1744
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0516 Most representative HarvEST:Barley Assembly #32 Unigene = 3283 Most representative HarvEST:Barley Assembly #35 Unigene = 1744 HarvEST Unigene 35 Probe Set = Contig4674_at Unigene 35 Rice Locus = LOC_Os06g44620 Description for best rice BLAST hit to Unigene 35 member = 4-coumarate--CoA ligase 1, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0516 Original SNP name = 3283-1246 Description for best rice BLAST hit to Unigene 35 member = protein 4-coumarate--CoA ligase 1, putative, expressed; E value = 0 BLAST hit in the rice genome = 4-coumarate--CoA ligase 1, putative, expressed
Probe for Locus
HAR35_1744
Locus
POPA2_0516
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0516
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