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GrainGenes Marker Report: POPA2_0519

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Locus	POPA2_0519
Type	SNP
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 48.4 Hordeum-OPA123-2008-2H 48.4
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_14278
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0519 Most representative HarvEST:Barley Assembly #32 Unigene = 3298 Most representative HarvEST:Barley Assembly #35 Unigene = 14278 HarvEST Unigene 35 Probe Set = Contig4654_at Unigene 35 Rice Locus = LOC_Os07g44740 Description for best rice BLAST hit to Unigene 35 member = chaperonin, putative, expressed; E value = 2E-41 Marker name in barley Pilot OPA2 = 2_0519 Original SNP name = 3298-558 Description for best rice BLAST hit to Unigene 35 member = protein chaperonin, putative, expressed; E value = 2E-41 BLAST hit in the rice genome = chaperonin, putative, expressed
Probe for Locus	HAR35_14278
Locus	POPA1_0449 POPA2_0519
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare