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GrainGenes Marker Report: POPA2_0526

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Locus	POPA2_0526
Type	SNP
Synonym	Other name 11_20526 BOPA1_11_20526 BOPA1_3333-1209 Synonym 11_20526
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 80.3 Hordeum-OPA-2009-5H 99.56 Hordeum-OPA123-2008-5H 99.56 Hordeum-OPAConsensus-2011-5H 86.08
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16228 i_11_20526
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0526 Marker name in barley OPA1 = 11_20526 Original SNP name = 3333-1209 Most representative HarvEST:Barley Assembly #32 Unigene = 3333 Most representative HarvEST:Barley Assembly #35 Unigene = 16228 HarvEST Unigene 35 Probe Set = Contig4758_at Unigene 35 Rice Locus = LOC_Os09g32090 Description for best rice BLAST hit to Unigene 35 member = methyl-binding domain protein MBD111, putative, expressed; E value = 1E-119 Marker name in barley Pilot OPA2 = 2_0526 Description for best rice BLAST hit to Unigene 35 member = protein methyl-binding domain protein MBD111, putative, expressed; E value = 1E-119 BLAST hit in the rice genome = methyl-binding domain protein MBD111, putative, expressed
Probe for Locus	HAR35_16228
Locus	POPA2_0526
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare