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GrainGenes Marker Report: POPA2_0528

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Locus	POPA2_0528
Type	SNP
Synonym	Other name 11_20528 BOPA1_11_20528 BOPA1_334-1164 Synonym 11_20528
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 66.4 Hordeum-OPA-2009-2H 73.04 Hordeum-OPA123-2008-2H 73.04 Hordeum-OPAConsensus-2011-2H 84.35 Hordeum-OWB-OPA2008-2H 87.004
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_13829 i_11_20528
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0528 Marker name in barley OPA1 = 11_20528 Original SNP name = 334-1164 Most representative HarvEST:Barley Assembly #32 Unigene = 334 Most representative HarvEST:Barley Assembly #35 Unigene = 13829 HarvEST Unigene 35 Probe Set = Contig275_x_at; Contig309_s_at; Contig501_s_at; Contig925_s_at; HB19F10r_at Unigene 35 Rice Locus = LOC_Os04g42090 Description for best rice BLAST hit to Unigene 35 member = S-adenosylmethionine decarboxylase proenzyme, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0528 HarvEST Unigene 35 Probe Set = Contig275_x_at, Contig309_s_at, Contig501_s_at, Contig925_s_at, HB19F10r_at Description for best rice BLAST hit to Unigene 35 member = protein S-adenosylmethionine decarboxylase proenzyme, putative, expressed; E value = 0 BLAST hit in the rice genome = S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Probe for Locus	HAR35_13829
Locus	POPA2_0528
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare