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GrainGenes Marker Report: POPA2_0531

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Locus	POPA2_0531
Type	SNP
Synonym	Other name 11_20531 BOPA1_11_20531 BOPA1_3349-759 Synonym 11_20531
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 95 Hordeum-OPA-2009-6H 97.39 Hordeum-OPA123-2008-6H 97.39 Hordeum-OPAConsensus-2011-6H 111.08
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1828 i_11_20531
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0531 Marker name in barley OPA1 = 11_20531 Original SNP name = 3349-759 Most representative HarvEST:Barley Assembly #32 Unigene = 3349 Most representative HarvEST:Barley Assembly #35 Unigene = 1828 HarvEST Unigene 35 Probe Set = Contig4732_s_at; HV12A16u_s_at Unigene 35 Rice Locus = LOC_Os02g54770 Description for best rice BLAST hit to Unigene 35 member = splicing factor, arginine/serine-rich 7, putative, expressed; E value = 2E-81 Marker name in barley Pilot OPA2 = 2_0531 HarvEST Unigene 35 Probe Set = Contig4732_s_at, HV12A16u_s_at Description for best rice BLAST hit to Unigene 35 member = protein splicing factor, arginine/serine-rich 7, putative, expressed; E value = 2E-81 BLAST hit in the rice genome = splicing factor, arginine/serine-rich 7, putative, expressed
Probe for Locus	HAR35_1828
Locus	POPA2_0531
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare