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GrainGenes Marker Report: POPA2_0534

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Locus	POPA2_0534
Type	SNP
Synonym	Other name 11_20534 BOPA1_11_20534 BOPA1_3359-1118 Synonym 11_20534
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 6.79 Hordeum-OPA123-2008-7H 6.79 Hordeum-OPAConsensus-2011-7H 4.5
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1550 i_11_20534
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0534 Marker name in barley OPA1 = 11_20534 Original SNP name = 3359-1118 Most representative HarvEST:Barley Assembly #32 Unigene = 3359 Most representative HarvEST:Barley Assembly #35 Unigene = 1550 HarvEST Unigene 35 Probe Set = Contig4694_s_at; Contig4695_at Unigene 35 Rice Locus = LOC_Os06g02240 Description for best rice BLAST hit to Unigene 35 member = nucleic acid binding protein, putative, expressed; E value = 1E-115 Marker name in barley Pilot OPA2 = 2_0534 HarvEST Unigene 35 Probe Set = Contig4694_s_at, Contig4695_at Description for best rice BLAST hit to Unigene 35 member = protein nucleic acid binding protein, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = nucleic acid binding protein, putative, expressed
Probe for Locus	HAR35_1550
Locus	POPA2_0534
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare