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GrainGenes Marker Report: POPA2_0562

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Locus	POPA2_0562
Type	SNP
Synonym	Other name 11_20562 BOPA1_11_20562 BOPA1_3452-1355 Synonym 11_20562
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 10.94 Hordeum-OPA123-2008-2H 10.94 Hordeum-OPAConsensus-2011-2H 10.86
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16004 i_11_20562
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0562 Marker name in barley OPA1 = 11_20562 Original SNP name = 3452-1355 Most representative HarvEST:Barley Assembly #32 Unigene = 3452 Most representative HarvEST:Barley Assembly #35 Unigene = 16004 HarvEST Unigene 35 Probe Set = Contig4827_s_at; Contig4828_at Unigene 35 Rice Locus = LOC_Os04g01290 Description for best rice BLAST hit to Unigene 35 member = PCI domain containing protein, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0562 HarvEST Unigene 35 Probe Set = Contig4827_s_at, Contig4828_at Description for best rice BLAST hit to Unigene 35 member = protein PCI domain containing protein, expressed; E value = 0 BLAST hit in the rice genome = PCI domain containing protein, expressed
Probe for Locus	HAR35_16004
Locus	POPA2_0562
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare