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GrainGenes Marker Report: POPA2_0569

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Locus	POPA2_0569
Type	SNP
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Core-2014_5H 180.54 Hordeum-OPA-2009-5H 191.97 Hordeum-OPA123-2008-5H 191.97 Hordeum-OPAConsensus-2011-5H 187.2
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_16239
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0569 Most representative HarvEST:Barley Assembly #32 Unigene = 3483 Most representative HarvEST:Barley Assembly #35 Unigene = 16239 HarvEST Unigene 35 Probe Set = Contig4873_s_at Unigene 35 Rice Locus = LOC_Os03g63950 Description for best rice BLAST hit to Unigene 35 member = plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed; E value = 1E-100 Marker name in barley Pilot OPA2 = 2_0569 Original SNP name = 3483-647 Original SNP name = U35_1803_604 Description for best rice BLAST hit to Unigene 35 member = protein plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed; E value = 1E-100 BLAST hit in the rice genome = plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_16239
Locus	POPA1_0478 POPA2_0569
Synonym	Synonym BCD197
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare