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GrainGenes Marker Report: POPA2_0570

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Locus	POPA2_0570
Type	SNP
Synonym	Synonym 11_20570
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 112.46 Hordeum-OPA123-2008-7H 112.46 Hordeum-OPAConsensus-2011-7H 112.35
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_15977
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0570 Marker name in barley OPA1 = 11_20570 Original SNP name = 3492-678 Most representative HarvEST:Barley Assembly #32 Unigene = 3492 Most representative HarvEST:Barley Assembly #35 Unigene = 15977 HarvEST Unigene 35 Probe Set = Contig4899_s_at Unigene 35 Rice Locus = LOC_Os06g46950 Description for best rice BLAST hit to Unigene 35 member = EF-hand Ca2+-binding protein CCD1, putative, expressed; E value = 3E-59 Marker name in barley Pilot OPA2 = 2_0570 Description for best rice BLAST hit to Unigene 35 member = protein EF-hand Ca2+-binding protein CCD1, putative, expressed; E value = 3E-59 BLAST hit in the rice genome = EF-hand Ca2+-binding protein CCD1, putative, expressed
Probe for Locus	HAR35_15977
Locus	POPA2_0570
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare