GrainGenes Marker Report: POPA2_0575
Locus
POPA2_0575
Type
SNP
Chromosome
1H
Chromosome Arm
1HS
Map
Hordeum-OPA-2009-1H 17.26 Hordeum-OPA123-2008-1H 17.26
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_2010
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0575 Most representative HarvEST:Barley Assembly #32 Unigene = 3519 Most representative HarvEST:Barley Assembly #35 Unigene = 2010 HarvEST Unigene 35 Probe Set = Contig5009_at; Contig5010_s_at; HZ54E21r_s_at Unigene 35 Rice Locus = LOC_Os05g02250 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 5E-71 Marker name in barley Pilot OPA2 = 2_0575 Original SNP name = 3519-116 HarvEST Unigene 35 Probe Set = Contig5009_at, Contig5010_s_at, HZ54E21r_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 5E-71 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_2010
Locus
POPA1_0484 POPA2_0575
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0575
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
| ||||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
|