Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0585

[Submit comment/correction]

Locus	POPA2_0585
Type	SNP
Synonym	Other name 11_20585 BOPA1_11_20585 BOPA1_3576-2715 Synonym 11_20585
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 57.2 Hordeum-OPA-2009-2H 63.53 Hordeum-OPA123-2008-2H 63.53 Hordeum-OPAConsensus-2011-2H 72.03
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15604 i_11_20585
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0585 Marker name in barley OPA1 = 11_20585 Original SNP name = 3576-2715 Most representative HarvEST:Barley Assembly #32 Unigene = 3576 Most representative HarvEST:Barley Assembly #35 Unigene = 15604 HarvEST Unigene 35 Probe Set = Contig4975_at; Contig966_at; Contig966_s_at Unigene 35 Rice Locus = LOC_Os07g49520 Description for best rice BLAST hit to Unigene 35 member = 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0585 HarvEST Unigene 35 Probe Set = Contig4975_at, Contig966_at, Contig966_s_at Description for best rice BLAST hit to Unigene 35 member = protein 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_15604
Locus	POPA2_0585
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare