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GrainGenes Marker Report: POPA2_0603

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Locus
POPA2_0603
Type
SNP
Synonym
Other name11_20603
BOPA1_11_20603
BOPA1_3671-59
Synonym11_20603
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H135.56
Hordeum-OPA123-2008-1H135.56
Hordeum-OPAConsensus-2011-1H138.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1948
i_11_20603
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0603
Marker name in barley OPA1 = 11_20603
Original SNP name = 3671-59
Most representative HarvEST:Barley Assembly #32 Unigene = 3671
Most representative HarvEST:Barley Assembly #35 Unigene = 1948
HarvEST Unigene 35 Probe Set = Contig5185_at
Unigene 35 Rice Locus = LOC_Os09g36700
Description for best rice BLAST hit to Unigene 35 member = extracellular ribonuclease LE precursor, putative, expressed; E value = 7E-92
Marker name in barley Pilot OPA2 = 2_0603
Description for best rice BLAST hit to Unigene 35 member = protein extracellular ribonuclease LE precursor, putative, expressed; E value = 7E-92
BLAST hit in the rice genome = extracellular ribonuclease LE precursor, putative, expressed


Probe for Locus
HAR35_1948
Locus
POPA2_0603
POPA1_0514
Synonym
SynonymABG373
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare