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GrainGenes Marker Report: POPA2_0611

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Locus	POPA2_0611
Type	SNP
Synonym	Other name 12_20611 BOPA2_12_20611 Synonym 12_20611
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 102.85 Hordeum-OPA123-2008-7H 102.85 Hordeum-OPAConsensus-2011-7H 104.32 Hordeum-OWB-OPA2008-7H 114.616
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2140 i_12_20611
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0611 Marker name in barley OPA1 = 12_20611 Original SNP name = 3717-1399 Most representative HarvEST:Barley Assembly #32 Unigene = 3717 Most representative HarvEST:Barley Assembly #35 Unigene = 2140 HarvEST Unigene 35 Probe Set = Contig5228_s_at Unigene 35 Rice Locus = LOC_Os06g48590 Description for best rice BLAST hit to Unigene 35 member = OsMPK7 - putative MAPK based on amino acid sequence homology, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0611 Marker name in barley OPA2 = 12_20611 Description for best rice BLAST hit to Unigene 35 member = protein OsMPK7 - putative MAPK based on amino acid sequence homology, expressed; E value = 0 BLAST hit in the rice genome = OsMPK7 - putative MAPK based on amino acid sequence homology, expressed
Probe for Locus	HAR35_2140
Locus	POPA2_0611
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare