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GrainGenes Marker Report: POPA2_0623

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Locus	POPA2_0623
Type	SNP
Synonym	Other name 11_20623 BOPA1_11_20623 BOPA1_3783-621 Synonym 11_20623
Chromosome	7H
Chromosome Arm	7HL
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16448 i_11_20623
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0623 Marker name in barley OPA1 = 11_20623 Original SNP name = 3783-621 Most representative HarvEST:Barley Assembly #32 Unigene = 3783 Most representative HarvEST:Barley Assembly #35 Unigene = 16448 HarvEST Unigene 35 Probe Set = Contig5248_s_at; Contig5249_at Unigene 35 Rice Locus = LOC_Os06g47150 Description for best rice BLAST hit to Unigene 35 member = auxin response factor 16, putative, expressed; E value = 1E-178 BLAST hit in the rice genome = auxin response factor 16, putative, expressed
Probe for Locus	HAR35_16448
Locus	POPA2_0623 POPA1_0540