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GrainGenes Marker Report: POPA2_0633

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Locus	POPA2_0633
Type	SNP
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 21.61 Hordeum-OPA123-2008-2H 21.61
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_2142
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0633 Most representative HarvEST:Barley Assembly #32 Unigene = 3828 Most representative HarvEST:Barley Assembly #35 Unigene = 2142 HarvEST Unigene 35 Probe Set = Contig5370_at; Contig5371_s_at Unigene 35 Rice Locus = LOC_Os04g20164 Description for best rice BLAST hit to Unigene 35 member = amine oxidase precursor, putative, expressed; E value = 1E-125 Marker name in barley Pilot OPA2 = 2_0633 Original SNP name = 3828-839 HarvEST Unigene 35 Probe Set = Contig5370_at, Contig5371_s_at Description for best rice BLAST hit to Unigene 35 member = protein amine oxidase precursor, putative, expressed; E value = 1E-125 BLAST hit in the rice genome = amine oxidase precursor, putative, expressed
Probe for Locus	HAR35_2142
Locus	POPA2_0633
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare