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GrainGenes Marker Report: POPA2_0641

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Locus	POPA2_0641
Type	SNP
Synonym	Other name 12_20641 BOPA2_12_20641 Synonym 12_20641
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_13746 i_12_20641
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0641 Marker name in barley OPA1 = 12_20641 Original SNP name = 3913-1715 Most representative HarvEST:Barley Assembly #32 Unigene = 3913 Most representative HarvEST:Barley Assembly #35 Unigene = 13746 HarvEST Unigene 35 Probe Set = Contig5449_at Unigene 35 Rice Locus = LOC_Os05g04340 Description for best rice BLAST hit to Unigene 35 member = glycogen synthase kinase-3 homolog MsK-1, putative, expressed; E value = 0 BLAST hit in the rice genome = glycogen synthase kinase-3 homolog MsK-1, putative, expressed
Probe for Locus	HAR35_13746
Locus	POPA2_0641