Query (optional)   in Class  

GrainGenes Marker Report: POPA2_0642

[Submit comment/correction]

Locus
POPA2_0642
Type
SNP
Synonym
Synonym11_20642
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H64.91
Hordeum-OPA123-2008-1H64.91
Hordeum-OPAConsensus-2011-1H62.6
Hordeum-OWB-OPA2008-1H71.917
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_16511
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0642
Marker name in barley OPA1 = 11_20642
Original SNP name = 3914-448
Most representative HarvEST:Barley Assembly #32 Unigene = 3914
Most representative HarvEST:Barley Assembly #35 Unigene = 16511
HarvEST Unigene 35 Probe Set = HS06J22u_s_at; HV_CEa0006I19r2_at
Unigene 35 Rice Locus = LOC_Os05g32630
Description for best rice BLAST hit to Unigene 35 member = peroxisomal carrier protein, putative, expressed; E value = 1E-168
Marker name in barley Pilot OPA2 = 2_0642
HarvEST Unigene 35 Probe Set = HS06J22u_s_at, HV_CEa0006I19r2_at
Description for best rice BLAST hit to Unigene 35 member = protein peroxisomal carrier protein, putative, expressed; E value = 1E-168
BLAST hit in the rice genome = peroxisomal carrier protein, putative, expressed


Probe for Locus
HAR35_16511
Locus
POPA2_0642
POPA1_0567
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare