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GrainGenes Marker Report: POPA2_0643

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Locus	POPA2_0643
Type	SNP
Synonym	Synonym 12_20643
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 56.99 Hordeum-OPA123-2008-2H 56.99 Hordeum-OPAConsensus-2011-2H 62.85 Hordeum-OWB-OPA2008-2H 71.665
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_2072
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0643 Marker name in barley OPA1 = 12_20643 Original SNP name = 3915-2071 Most representative HarvEST:Barley Assembly #32 Unigene = 3915 Most representative HarvEST:Barley Assembly #35 Unigene = 2072 HarvEST Unigene 35 Probe Set = Contig5444_s_at Unigene 35 Rice Locus = LOC_Os07g39470 Description for best rice BLAST hit to Unigene 35 member = chitin-inducible gibberellin-responsive protein 2, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0643 Marker name in barley OPA2 = 12_20643 Original SNP name = U32_3403_91 Description for best rice BLAST hit to Unigene 35 member = protein chitin-inducible gibberellin-responsive protein 2, putative, expressed; E value = 0 BLAST hit in the rice genome = chitin-inducible gibberellin-responsive protein 2, putative, expressed
Probe for Locus	HAR35_2072
Locus	POPA2_0643
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare